Trump administration appeals ruling restoring $2.7B in federal funding to Harvard

At issue is a ruling issued in September by U.S. District Judge Allison D. Burroughs, which blocked the Trump administration's attempt to terminate the more than $2 billion in federal funding for Harvard, which she said violated its First Amendment and due process protections.

"A review of the administrative record makes it difficult to conclude anything other than that defendants used antisemitism as a smokescreen for a targeted, ideologically-motivated assault on this country's premier universities," Burroughs said in a blistering, 84-page order. She described the actions as tantamount to "an ideologically-motivated assault."

"We must fight against antisemitism, but we equally need to protect our rights, including our right to free speech, and neither goal should nor needs to be sacrificed on the altar of the other," she added. 

News of the appeal revives a high-stakes court fight that has shaken, if not displaced, Harvard's status at the uppermost echelons of higher education in the U.S. It comes as other private and public universities have also come under scrutiny by the administration, prompting fresh criticism that the administration is seeking to exercise undue influence over curriculum and leadership at major institutions.

The Trump administration, for its part, accused Harvard of "fostering violence, antisemitism, and coordinating with the Chinese Communist Party on its campus." 

Lawyers for the Justice Department argued it had "every right" to cancel the funding for Harvard after it failed to comply with its demands.

Trump officials had immediately vowed to appeal the lower court's ruling in September, but declined to provide a time frame as to when it would do so. The administration and university officials have also reportedly been engaged in negotiations, though the status of those efforts remains unclear. 

A spokesperson for Harvard told Fox News Digital that the court's September order reinstated "critical research funding that advances science and life-saving medical breakthroughs, strengthens national security, and enhances our nation's competitiveness and economic priorities."

"We remain confident in our legal position," this person added.

The White House did not immediately respond to a request for comment on the appeal. 

The move follows a January blitz by the Trump administration of civil rights investigations into dozens of prominent universities. Harvard, for its part, was the first school to sue the Trump administration over its efforts - and the school argues it has been hit by punitive efforts and investigations in the months since, which it argues is an act of retaliation. 

At least six federal agencies have launched investigations into Harvard this year, university officials said. The administration also previously sought to ban Harvard's ability to host international students by attempting to revoke its certification status under the Student and Exchange Visitor Program (SEVP) - a program led by the Department of Homeland Security that allows universities to sponsor international students for U.S. visas. (That action was temporarily blocked by a lower court.)

Even if the Trump administration loses on the merits of the case, Gavoor said, "there's a point to be argued that it may have won as a function of policy."

Meanwhile, any long-term financial fallout the university might suffer as a result remains to be seen. 

Harvard, in October, reported a budget deficit of $113 million for the fiscal year - its first deficit since the COVID-19 pandemic - and which the school's president attributed to the tumult and uncertainty created as a result of the protracted court fight.

"Even by the standards of our centuries-long history, fiscal year 2025 was extraordinarily challenging, with political and economic disruption affecting many sectors, including higher education," Harvard President Alan Garber said in a statement.